Hanwen Xu

Hanwen Xu

Master Student

Automation, Tsinghua University

Email: xuhanwen[at] mails.tsinghua.edu.cn

About

I am a PhD student who study Computer Science at University of Washington, supervised by Prof. Sheng Wang. Before that, I received my Bachelor's and Master's degree from the Department of Automation, Tsinghua University.

My research interests are about facilitating knowledge discovey by scientific literature mining. I am excited about translating these knowledge into easy-to-understand natural languages.

News

NEW [December, 2022] My BioTranslator paper has been accepted to Nature Communications!
NEW [December, 2022] My drug combination prediction paper has been accepted to RECOMB 2023!
NEW [December, 2021] My protein function prediction paper has been accepted to RECOMB 2022!
NEW [November, 2021] Hanwen became the reviewer of RECOMB 2022!
[May, 2021] Our ARIC paper was accepted by Briefings in Bioinformatics!
[May, 2021] Our cfDNA Pipeline paper was accepted by Bioinformatics!
[Spring, 2021] Independent research started at Prof. Sheng Wang's group!
[February, 2021] Our S3 paper was accepted by UbiComp 2021!
[August, 2020] I was arwarded the Outstanding Graduates and started my graduate study at Bioinformatics Division, Tsinghua University
[November, 2019] I was awarded the National Scholarship 2019.
[June, 2019] I started my internship in Computer Science, Purdue University!
[June, 2019] Our transportation forecasting paper was accepted by 2019 IEEE Intelligent Transportation Systems Conference (ITSC)!

Research

	Multilingual translation for zero-shot biomedical classification using BioTranslator Hanwen Xu, Addie Woicik, Hoifung Poon, Russ B. Altman, Sheng Wang Nature Communications. [Paper] [Code]
	ProTranslator: zero-shot protein function prediction using textual description Hanwen Xu, Sheng Wang Accepted by RECOMB 2022. [Paper] [Code]
	PccGEO: prior constraints conditioned genetic elements optimization Hanwen Xu, Pengcheng Zhang, Haochen Wang, Lei Wei, Zhirui Hu, Xiaowo Wang Preprints. ( equal contribution) [Paper]
	ARIC: accurate and robust inference of cell type proportions from bulk gene expression Wei Zhang, Hanwen Xu*, Rong Qiao, Bixi Zhong, Xianglin Zhang, Jin Gu, Xuegong Zhang, Lei Wei, Xiaowo Wang Briefings in Bioinformatics, Impact factor: 11.6. ( equal contribution) [Paper] [Project Website]
	Learning dynamic graph embedding for traffic flow forecasting: A graph self-attentive method Zifeng Kang, Hanwen Xu*, Jianming Hu, Xin Pei IEEE Intelligent Transportation Systems Conference, 2019. ( equal contribution) [Paper]
	S3: Side Channel Attack on Stylus Pencil Through Sensors Habiba Farrukh, Tinghan Yang, Hanwen Xu, Yuxuan Yin, He Wang and Z.Berkay Celik UbiComp, 2021. [Paper]
	cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data Wei Zhang, Lei Wei, Jiaqi Huang, Bixi Zhong, Jiaqi Li, Hanwen Xu, Shuying He, Yu Liu, Juhong Liu, Hairong Lv, Xiaowo Wang UbiComp, 2021. [Paper] [Project Website]

Selected Awards

The Scholarship for Comprehensive Outstanding Performance of Graduate Students, 2021.
Outstanding Graduates (Beijing, Tsinghua University & Dept. of Automation), 2020.
National Scholarship, Tsinghua University, 2019.
Innovation Award of Science and Technology, Tsinghua University, 2019.

Miscellaneous

I like running! I have been insisted on the 5 km running everyday for one year! I can finish the 3 km running in 11'30 minutes, 5 km running in 21 minutes, and 10 km running in 46 minutes! Begin running with me, we can have a better life!

Hanwen Xu Last updated: November, 2021